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Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation

Title
Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation
Author(s)
Ji, SanghoYang, WonjinYu, Wookyung
Issued Date
2021-11
Citation
Scientific Reports, v.11, no.1
Type
Article
Keywords
SODIUMGPCRSPREDICTIONRECEPTORSPROTEINSCANNABISDATABASECRYSTAL-STRUCTURESOFTWARE PROGRAMACCURATE DOCKING
ISSN
2045-2322
Abstract
The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue–residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na+ pocket, extracellular N-terminus–TM2–ECL1–TM3 interface including D2.63–K3.28 salt-bridge, and extracellular ECL2–TM5–ECL3–TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na+ pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1. © 2021, The Author(s).
URI
http://hdl.handle.net/20.500.11750/15861
DOI
10.1038/s41598-021-01767-5
Publisher
Nature Publishing Group
Related Researcher
  • 유우경 Yu, Wookyung
  • Research Interests protein biophysics; protein folding; protein dynamics and conformational change
Files in This Item:
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000719533100062.pdf

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Appears in Collections:
Department of Brain Sciences Laboratory of Protein Biophysics 1. Journal Articles

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