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Deep learning-based automated analysis of red blood cells three-dimensional morphological changes in the storage lesion

Title
Deep learning-based automated analysis of red blood cells three-dimensional morphological changes in the storage lesion
Alternative Title
딥러닝 기반 저장기간에 따른 적혈구 3차원 형상 변화 자동 분석
Author(s)
Eunji Kim
DGIST Authors
Eunji KimInkyu MoonOkkyun Lee
Advisor
문인규
Co-Advisor(s)
Okkyun Lee
Issued Date
2021
Awarded Date
2021/02
Type
Thesis
Subject
Deep learning, Digital holographic microscopy, 딥러닝, 생성적 적대 신경망, 디지털 홀로그램 현미경, 적혈구 분류, 적혈구 분할
Abstract
This paper presents a novel approach that automatically performs the immediate segmentation and classification of red blood cell storage lesions according to the storage period from phase images obtained with a digital holographic microscope. As a new approach, Pix2Pix-based network among deep learning technologies was proposed, which was compared with the existing U-net network. Our method showed excellent performance in red blood cell multi-class segmentation and classification accuracy with a high throughput of about 152 cells per second and a Dice coefficient of about 0.94. In addition, to evaluate the trained model, our method was applied to red blood cell images of 11 storage periods. In red blood cell images according to storage period, our method not only showed an excellent performance of about 95% in the confusion matrix, but was also in good agreement with previous results regarding changes in red blood cell markers(dominant shape) with storage period. Therefore, our method is believed to be useful as an automatic segmentation and classification method of red blood cell storage lesions by showing excellent performance in the identification of red blood cell storage lesions for safe blood transfusion.
Table Of Contents
Ⅰ. INTRODUCTION 1
Ⅱ. DIGITAL HOLOGRAPHIC MICROSCOPY(DHM) AND SAMPLE PREPARATION 6
2.1 Label-free off-axis DHM 6
2.2 Sample preparation 9
Ⅲ. DATA PREPROCESSING 10
Ⅳ. PROPOSED DEEP LEARNING MODEL 12
4.1 U-net 12
4.2 Pix2Pix 13
4.3 Construction of the patches and augmentation 16
4.4 Marker-based watershed algorithm 16
Ⅴ. EVALUATION METRIC 17
Ⅵ. EXPERIMENT RESULTS 18
6.1 Implementation details 18
6.2 Evaluation of multi-class RBC segmentation and classification performance 20
6.3 Classifications of RBCs based on storage durations & automated analysis of RBCs aging markers 20
Ⅶ. CONCLUSION 23
URI
http://dgist.dcollection.net/common/orgView/200000364438

http://hdl.handle.net/20.500.11750/16695
DOI
10.22677/thesis.200000364438
Degree
Master
Department
Robotics Engineering
Publisher
DGIST
Related Researcher
  • 문인규 Moon, Inkyu
  • Research Interests 지능형 영상시스템; AI기반 영상분석; AI기반 암호시스템; Intelligent Imaging Systems; AI-based Image Analysis; AI-based Cryptosystems & Cryptanalysis
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Department of Robotics and Mechatronics Engineering Theses Master

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