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Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks

Title
Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks
Author(s)
Lee, KyoungminKim, TaehyeongCheon, M.Yu, Wookyung
Issued Date
2022-04
Citation
Scientific Reports, v.12, no.1
Type
Article
Keywords
ENDOPLASMIC-RETICULUM STRESSUNFOLDED PROTEIN RESPONSEMESSENGER-RNATRANSCRIPTION FACTORMYOCARDIAL-ISCHEMIAINDUCIBLE FACTORER STRESSKINASEBRAINEXPRESSION
ISSN
2045-2322
Abstract
Repeated cocaine use poses many serious health risks to users. One of the risks is hypoxia and ischemia (HI). To restore the biological system against HI, complex biological mechanisms operate at the gene level. Despite the complexity of biological mechanisms, there are common denominator genes that play pivotal roles in various defense systems. Among these genes, the cAMP response element-binding (Creb) protein contributes not only to various aspects of drug-seeking behavior and drug reward, but also to protective mechanisms. However, it is still unclear which Creb members are key players in the protection of cocaine-induced HI conditions. Herein, using one of the state-of-the-art deep learning methods, the generative adversarial network, we revealed that the OASIS family, one of the Creb family, is a key player in various defense mechanisms such as angiogenesis and unfolded protein response against the HI state by unveiling hidden mRNA expression profiles. Furthermore, we identified mysterious kinases in the OASIS family and are able to explain why the prefrontal cortex and hippocampus are vulnerable to HI at the genetic level. © 2022, The Author(s).
URI
http://hdl.handle.net/20.500.11750/16937
DOI
10.1038/s41598-022-10772-1
Publisher
Nature Publishing Group
Related Researcher
  • 유우경 Yu, Wookyung
  • Research Interests protein biophysics; protein folding; protein dynamics and conformational change
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Department of Brain Sciences Laboratory of Protein Biophysics 1. Journal Articles

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