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FR-MIL: Distribution Re-Calibration-Based Multiple Instance Learning With Transformer for Whole Slide Image Classification
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Title
FR-MIL: Distribution Re-Calibration-Based Multiple Instance Learning With Transformer for Whole Slide Image Classification
Issued Date
2025-01
Citation
IEEE Transactions on Medical Imaging, v.44, no.1, pp.409 - 421
Type
Article
Author Keywords
TransformersFeature extractionTask analysisMedical diagnostic imagingBenchmark testingVectorsUncertaintyHistopathologymultiple instance learningwhole slide imagesweakly supervised learning
Keywords
LOCALIZATION
ISSN
0278-0062
Abstract
In digital pathology, whole slide images (WSI) are crucial for cancer prognostication and treatment planning. WSI classification is generally addressed using multiple instance learning (MIL), alleviating the challenge of processing billions of pixels and curating rich annotations. Though recent MIL approaches leverage variants of the attention mechanism to learn better representations, they scarcely study the properties of the data distribution itself i.e., different staining and acquisition protocols resulting in intra-patch and inter-slide variations. In this work, we first introduce a distribution re-calibration strategy to shift the feature distribution of a WSI bag (instances) using the statistics of the max-instance (critical) feature. Second, we enforce class (bag) separation via a metric loss assuming that positive bags exhibit larger magnitudes than negatives. We also introduce a generative process leveraging Vector Quantization (VQ) for improved instance discrimination i.e., VQ helps model bag latent factors for improved classification. To model spatial and context information, a position encoding module (PEM) is employed with transformer-based pooling by multi-head self-attention (PMSA). Evaluation of popular WSI benchmark datasets reveals our approach improves over state-of-the-art MIL methods. Further, we validate the general applicability of our method on classic MIL benchmark tasks and for point cloud classification with limited points. https://github.com/PhilipChicco/FRMIL
URI
http://hdl.handle.net/20.500.11750/57872
DOI
10.1109/TMI.2024.3446716
Publisher
Institute of Electrical and Electronics Engineers
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