Cited time in webofscience Cited time in scopus

Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers

Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers
Vu, Minh HungMohammad, Hazara BegumNguyen, Thy N. C.Lee, Jun HyungDo, YejiSung, Ji-YounLee, Seung HyeunKim, Min-Sik
Issued Date
Proteomics - Clinical Applications, v.17, no.5
Author Keywords
bronchoalveolar lavage fluidproteomicsSCX StageTipssmall cell lung cancerTMT labeling
Purpose: Small cell lung cancer (SCLC) is one of the malignant cancers with aggressive progression and poor prognosis. Bronchoalveolar lavage fluid (BALF) has been arising recently as a potential source of biomarkers for lung cancers. In this study, we performed quantitative BALF proteomic analysis to identify potential biomarkers for SCLC. Experimental design: BALF were collected from tumor-bearing lungs and non-tumor lungs of five SCLC patients. Then, BALF proteomes were prepared for a TMT-based quantitative mass spectrometry analysis. Differentially expressed proteins (DEP) were identified when considering individual variation. Potential SCLC biomarker candidates were validated by immunohistochemistry (IHC). A public database of multiple SCLC cell lines was used to evaluate the correlation of these markers with SCLC subtypes and chemo-drug responses. Results: We identified 460 BALF proteins in SCLC patients and observed considerable individual variation among the patients. Immunohistochemical analysis and bioinformatics resulted in the identification of CNDP2 and RNPEP as potential subtype markers for ASCL1 and NEUROD1, respectively. In addition, CNDP2 was found to be positively correlated with responses to etoposide, carboplatin, and irinotecan. Conclusions and clinical relevance: BALF is an emerging source of biomarkers, making it useful for the diagnosis and prognosis of lung cancers. We characterized the proteomes of paired BALF samples collected from tumor-bearing and non-tumor lungs of SCLC patients. Several proteins were found elevated in tumor-bearing BALF, and especially CNDP2 and RNPEP appeared to be potential indicators for ASLC1-high and NEUROD1-high subtypes of SCLC, respectively. The positive correlation of CNDP2 with chemo-drug responses would help to make decisions for treatment of SCLC patients. These putative biomarkers could be comprehensively investigated for a clinical use towards precision medicine. © 2023 Wiley-VCH GmbH.
Related Researcher
  • 김민식 Kim, Min-Sik 뉴바이올로지학과
  • Research Interests Cancer Proteogenomics; Biomarker Discovery; Integrative Multi-Omics
Files in This Item:

There are no files associated with this item.

Appears in Collections:
Department of New Biology Laboratory for QBIO and Precision Medicine 1. Journal Articles


  • twitter
  • facebook
  • mendeley

Items in Repository are protected by copyright, with all rights reserved, unless otherwise indicated.