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  Department of New Biology Laboratory for QBIO and Precision Medicine

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Article
Assessing Long-Term Stored Tissues for Multi-Omics Data Quality and Proteogenomics Suitability
  • Song, Kyu Jin ; 
  • Kim, Minsuh ; 
  • Heo, Yong Jin ; 
  • Cho, Kyung-Cho ; 
  • Oh, Jae-Won ; 
  • Kim, Dae Ho ; 
  • Hwa, Chanwoong ; 
  • Do, Yeji ; 
  • Choi, Seunghyuk ; 
  • Hwang, Hee Sang ; 
    • et al
  • 2025-09
  • Journal of Proteome Research, v.24, no.9, pp.4563 - 4574
  • American Chemical Society
  • View : 9
  • Download : 0
Article
The chloroplast-targeted long noncoding RNA CHLORELLA mediates chloroplast functional transition across leaf ageing via anterograde signalling
  • Kang, Myeong Hoon ; 
  • Lee, Juhyeon ; 
  • Kim, Jinkwang ; 
  • Mohammad, Hazara Begum ; 
  • Park, Jeehye ; 
  • Jung, Hyun Ju ; 
  • Kim, Seonghwan ; 
  • Lee, Heeho ; 
  • Yang, Seong Wook ; 
  • Kwak, June Myoung ; 
    • et al
  • 2025-10
  • Nature Plants
  • Nature Publishing Group
  • View : 27
  • Download : 0
Article
Direct Detection of Textile Dyes in Environmental Samples by LDI and MALDI FT-ICR MS
  • Alam, Rafiqul ; 
  • Mahmood, Raisul Awal ; 
  • Yanto, Dede Heri Yuli ; 
  • Kim, Min-Sik ; 
  • Kim, Sunghwan
  • 2025-08
  • Analytical Chemistry, v.97, no.31, pp.16723 - 16732
  • American Chemical Society
  • View : 325
  • Download : 0
Article
On the Ocean of Biomarkers for the Precise Diagnosis and Prognosis of Lung Diseases
  • Pham, Van Duc ; 
  • Lee, Jung-Hyung ; 
  • Shin, Doyun ; 
  • Vu, Hung M. ; 
  • Jung, Junyang ; 
  • Kashyap, Manoj K. ; 
  • Lee, Seung Hyeun ; 
  • Kim, Min-Sik
  • 2025-05
  • Pham, Van Duc. (2025-05). On the Ocean of Biomarkers for the Precise Diagnosis and Prognosis of Lung Diseases. Proteomics - Clinical Applications, 19(3). doi: 10.1002/prca.70003
  • Wiley
  • View : 162
  • Download : 0
Article
Recent advances in single-cell metabolomics using mass spectrometry: emerging challenges and future perspectives
  • 2025-04
  • Applied Spectroscopy Reviews, v.60, no.9-10, pp.832 - 868
  • Taylor & Francis
  • View : 239
  • Download : 0

Targeting the Hippo pathway in Schwann cells ameliorates peripheral nerve degeneration via a polypharmacological mechanism

Article
Targeting the Hippo pathway in Schwann cells ameliorates peripheral nerve degeneration via a polypharmacological mechanism
  • Chung, Hyung-Joo ; 
  • Nguyen, Thy N.C. ; 
  • Lee, Ji Won ; 
  • Huh, Youngbuhm ; 
  • Ko, Seungbeom ; 
  • Lim, Heejin ; 
  • Seo, Hyewon ; 
  • Ha, Young-Geun ; 
  • Chang, Jeong Ho ; 
  • Woo, Jae-Sung ; 
    • et al
  • 2024-10
  • Chung, Hyung-Joo. (2024-10). Targeting the Hippo pathway in Schwann cells ameliorates peripheral nerve degeneration via a polypharmacological mechanism. Neurotherapeutics, 21(6). doi: 10.1016/j.neurot.2024.e00458
  • Elsevier
  • View : 298
  • Download : 24
Article
Deciphering Cancer Complexity: Integrative Proteogenomics and Proteomics Approaches for Biomarker Discovery
  • Rao, Rashmi ; 
  • Gulfishan, Mohd ; 
  • Kim, Min-Sik ; 
  • Kashyap, Manoj Kumar
  • 2024-10
  • Rao, Rashmi. (2024-10). Deciphering Cancer Complexity: Integrative Proteogenomics and Proteomics Approaches for Biomarker Discovery. Methods in Molecular Biology, 2859, 211–237. doi: 10.1007/978-1-0716-4152-1_12
  • Springer Nature
  • View : 175
  • Download : 0
Article
Niclosamide attenuates calcification in human heart valvular interstitial cells through inhibition of the AMPK/mTOR signaling pathway
  • Vu, Minh Hung ; 
  • Shiwakoti, Saugat ; 
  • Ko, Ju-Young ; 
  • Bang, Geul ; 
  • Lee, Eunmi ; 
  • Kim, Eunmin ; 
  • Park, Sin-Hee ; 
  • Park, Eun-Hye ; 
  • Woo Kim, Chan ; 
  • Kim, Young Jin ; 
    • et al
  • 2024-12
  • Vu, Minh Hung. (2024-12). Niclosamide attenuates calcification in human heart valvular interstitial cells through inhibition of the AMPK/mTOR signaling pathway. Biochemical Pharmacology, 230. doi: 10.1016/j.bcp.2024.116614
  • Elsevier
  • View : 168
  • Download : 0

Proteogenomic analysis reveals non-small cell lung cancer subtypes predicting chromosome instability, and tumor microenvironment

Article
Proteogenomic analysis reveals non-small cell lung cancer subtypes predicting chromosome instability, and tumor microenvironment
  • Song, Kyu Jin ; 
  • Choi, Seunghyuk ; 
  • Kim, Kwoneel ; 
  • Hwang, Hee Sang ; 
  • Chang, Eunhyong ; 
  • Park, Ji Soo ; 
  • Shim, Seok Bo ; 
  • Choi, Seunghwan ; 
  • Heo, Yong Jin ; 
  • An, Woo Ju ; 
    • et al
  • 2024-11
  • Song, Kyu Jin. (2024-11). Proteogenomic analysis reveals non-small cell lung cancer subtypes predicting chromosome instability, and tumor microenvironment. Nature Communications, 15(1). doi: 10.1038/s41467-024-54434-4
  • Nature Publishing Group
  • View : 163
  • Download : 53

Pan-cancer proteogenomic landscape of whole-genome doubling reveals putative therapeutic targets in various cancer types

Article
Pan-cancer proteogenomic landscape of whole-genome doubling reveals putative therapeutic targets in various cancer types
  • Chang, Eunhyong ; 
  • Kim, Su-Jung ; 
  • Hwang, Hee Sang ; 
  • Song, Kyu Jin ; 
  • Kim, Kwoneel ; 
  • Kim, Min-Sik ; 
  • Jang, Se Jin ; 
  • You, Sungyong ; 
  • Kim, Kwang Pyo ; 
  • An, Joon-Yong
  • 2024-08
  • Chang, Eunhyong. (2024-08). Pan-cancer proteogenomic landscape of whole-genome doubling reveals putative therapeutic targets in various cancer types. Clinical and Translational Medicine, 14(8). doi: 10.1002/ctm2.1796
  • Wiley
  • View : 143
  • Download : 59

Exploring the feasibility of a single-protoplast proteomic analysis

Article
Exploring the feasibility of a single-protoplast proteomic analysis
  • Vu, Minh Hung ; 
  • Lee, Ju Yeon ; 
  • Kim, Yongmin ; 
  • Park, Sanghoon ; 
  • Izaguirre, Fabiana ; 
  • Lee, Juhyeon ; 
  • Lee, Jung-Hyun ; 
  • Jo, Minjoung ; 
  • Woo, Hye Ryun ; 
  • Kim, Jin Young ; 
    • et al
  • 2024-07
  • Vu, Minh Hung. (2024-07). Exploring the feasibility of a single-protoplast proteomic analysis. Journal of Analytical Science and Technology, 15(1). doi: 10.1186/s40543-024-00457-x
  • Springer
  • View : 224
  • Download : 34

A comparative study of ammonia solubility in imidazolium-based ionic liquids with different structural compositions

Article
A comparative study of ammonia solubility in imidazolium-based ionic liquids with different structural compositions
  • Salman, Muhammad ; 
  • Lee, Ji Won ; 
  • Lee, Sang Hyuk ; 
  • Lee, Min Ho ; 
  • Pham Van Duc ; 
  • Kim, Min-Sik ; 
  • Cho, Daeheum ; 
  • Lee, Hye Jin
  • 2024-01
  • Salman, Muhammad. (2024-01). A comparative study of ammonia solubility in imidazolium-based ionic liquids with different structural compositions. Heliyon, 10(2). doi: 10.1016/j.heliyon.2024.e24305
  • Cell Press
  • View : 436
  • Download : 83
Article
High-Throughput Quantitative Analysis of Amino Acids in Freeze-Dried Drops Using Time-of-Flight Secondary Ion Mass Spectrometry
  • Lim, Heejin ; 
  • Lee, Siheun ; 
  • Jin, Jong Sung ; 
  • Kim, Min-Sik
  • 2024-01
  • Lim, Heejin. (2024-01). High-Throughput Quantitative Analysis of Amino Acids in Freeze-Dried Drops Using Time-of-Flight Secondary Ion Mass Spectrometry. Analytical Chemistry, 96(9), 3717–3721. doi: 10.1021/acs.analchem.3c04855
  • American Chemical Society
  • View : 296
  • Download : 0
Article
Parallel accumulation-serial fragmentation method for in-depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer
  • Vu, Minh Hung ; 
  • Huh, Sunghyun ; 
  • Lee, Jun Hyung ; 
  • Lee, Seung Hyeun ; 
  • Kim, Min-Sik
  • 2024-03
  • Vu, Minh Hung. (2024-03). Parallel accumulation-serial fragmentation method for in-depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer. Proteomics - Clinical Applications, 18(2). doi: 10.1002/prca.202300053
  • Wiley
  • View : 258
  • Download : 0
Article
Advances in Mass Spectrometry-Based Single Cell Analysis
  • Lee, Siheun ; 
  • Vu, Minh Hung ; 
  • Lee, Jung-Hyun ; 
  • Lim, Heejin ; 
  • Kim, Min-Sik
  • 2023-03
  • Lee, Siheun. (2023-03). Advances in Mass Spectrometry-Based Single Cell Analysis. Biology, 12(3). doi: 10.3390/biology12030395
  • MDPI
  • View : 418
  • Download : 25
Article
Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers
  • Vu, Minh Hung ; 
  • Mohammad, Hazara Begum ; 
  • Nguyen, Thy N. C. ; 
  • Lee, Jun Hyung ; 
  • Do, Yeji ; 
  • Sung, Ji-Youn ; 
  • Lee, Seung Hyeun ; 
  • Kim, Min-Sik
  • 2023-09
  • Vu, Minh Hung. (2023-09). Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers. Proteomics - Clinical Applications, 17(5). doi: 10.1002/prca.202300011
  • Wiley
  • View : 359
  • Download : 0
Article
Dysregulation of the Wnt/β-catenin signaling pathway via Rnf146 upregulation in a VPA-induced mouse model of autism spectrum disorder
  • Park, Gaeun ; 
  • Jang, Wooyoung Eric ; 
  • Kim, Seoyeon ; 
  • Gonzales, Edson Luck ; 
  • Ji, Jungeun ; 
  • Choi, Seunghwan ; 
  • Kim, Yujin ; 
  • Park, Ji Hwan ; 
  • Mohammad, Hazara Begum ; 
  • Bang, Geul ; 
    • et al
  • 2023-08
  • Experimental & Molecular Medicine, v.55, no.8, pp.1783 - 1794
  • Springer Nature
  • View : 508
  • Download : 0
Article
Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes
  • Hyeon, Do Young ; 
  • Nam, Dowoon ; 
  • Han, Youngmin ; 
  • Kim, Duk Ki ; 
  • Kim, Gibeom ; 
  • Kim, Daeun ; 
  • Bae, Jingi ; 
  • Back, Seunghoon ; 
  • Mun, Dong-Gi ; 
  • Madar, Inamul Hasan ; 
    • et al
  • 2023-02
  • Hyeon, Do Young. (2023-02). Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes. Nature Cancer, 4(2), 290–307. doi: 10.1038/s43018-022-00479-7
  • Nature Publishing Group
  • View : 633
  • Download : 0
Article
Comparative Sample Preparation Methods for a Label-Free Proteomic Analysis
  • Nguyen, Thy Ngoc Chau ; 
  • Lee, Jung Hyun ; 
  • Kim, Nayeon ; 
  • Choi, Jae Rim ; 
  • Vu, Minh Hung ; 
  • Kim, Min-Sik
  • 2022-12
  • Nguyen, Thy Ngoc Chau. (2022-12). Comparative Sample Preparation Methods for a Label-Free Proteomic Analysis. Mass Spectrometry Letters, 13(4), 184–188. doi: 10.5478/MSL.2022.13.4.184
  • Korean Society for Mass Spectrometry
  • View : 456
  • Download : 0
Article
RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases
  • Magnusson, Rasmus ; 
  • Rundquist, Olof ; 
  • Kim, Min Jung ; 
  • Hellberg, Sandra ; 
  • Na, Chan Hyun ; 
  • Benson, Mikael ; 
  • Gomez-Cabrero, David ; 
  • Kockum, Ingrid ; 
  • Tegner, Jesper N. ; 
  • Piehl, Fredrik ; 
    • et al
  • 2022-08
  • Magnusson, Rasmus. (2022-08). RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases. Frontiers in Molecular Biosciences, 9. doi: 10.3389/fmolb.2022.916128
  • Frontiers Media S.A.
  • View : 455
  • Download : 0
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